Package: fluxible 1.0.3
Joseph Gaudard
fluxible: Ecosystem Gas Fluxes Calculations for Closed Loop Chamber Setup
Processes the raw data from closed loop flux chamber (or tent) setups into ecosystem gas fluxes usable for analysis. It goes from a data frame of gas concentration over time (which can contain several measurements) and a meta data file indicating which measurement was done when, to a data frame of ecosystem gas fluxes including quality diagnostics. Functions provided include different models (exponential as described in Zhao et al (2018) <doi:10.1016/j.agrformet.2018.08.022>, quadratic and linear) to estimate the fluxes from the raw data, quality assessment, plotting for visual check and calculation of fluxes based on the setup specific parameters (chamber size, plot area, ...).
Authors:
fluxible_1.0.3.tar.gz
fluxible_1.0.3.zip(r-4.5)fluxible_1.0.3.zip(r-4.4)fluxible_1.0.3.zip(r-4.3)
fluxible_1.0.3.tgz(r-4.5-any)fluxible_1.0.3.tgz(r-4.4-any)fluxible_1.0.3.tgz(r-4.3-any)
fluxible_1.0.3.tar.gz(r-4.5-noble)fluxible_1.0.3.tar.gz(r-4.4-noble)
fluxible_1.0.3.tgz(r-4.4-emscripten)fluxible_1.0.3.tgz(r-4.3-emscripten)
fluxible.pdf |fluxible.html✨
fluxible/json (API)
NEWS
| # Install 'fluxible' in R: |
| install.packages('fluxible', repos = c('https://plant-functional-trait-course.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/plant-functional-trait-course/fluxible/issues
Pkgdown site:https://plant-functional-trait-course.github.io
- co2_conc - CO2 concentration
- co2_conc_mid_missing - CO2 concentration with missing data
- co2_conc_missing - CO2 concentration
- co2_df_missing - CO2 concentration with missing data
- co2_df_short - CO2 concentration
- co2_fluxes - CO2 fluxes
- co2_liahovden - CO2 concentration at Liahovden
- conc_poster - CO2 concentration
- raw_twogases - CO2 and CH4 concentration
- record_liahovden - Measurements meta data at Liahovden
- record_short - Measurements meta data
- slopes0 - Slopes for each flux
- slopes0_flag - Slopes for each flux
- slopes0_temp - Slopes for each flux
- slopes0_vol - Slopes for each flux
- slopes0lin - Slopes for each flux
- slopes0lin_flag - Slopes for each flux
- slopes30 - Slopes for each flux
- slopes30_flag - Slopes for each flux
- slopes30lin - Slopes for each flux
- slopes30lin_flag - Slopes for each flux
- slopes30qua - Slopes for each flux
- slopes30qua_flag - Slopes for each flux
- slopes60 - Slopes for each flux
- slopes60lin - Slopes for each flux
- twogases_record - Field record
Last updated 4 days agofrom:23021752d4. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 28 2025 |
| R-4.5-win | OK | Mar 28 2025 |
| R-4.5-mac | OK | Mar 28 2025 |
| R-4.5-linux | OK | Mar 28 2025 |
| R-4.4-win | OK | Mar 28 2025 |
| R-4.4-mac | OK | Mar 28 2025 |
| R-4.4-linux | OK | Mar 28 2025 |
| R-4.3-win | OK | Mar 28 2025 |
| R-4.3-mac | OK | Mar 28 2025 |
Exports:flux_calcflux_fittingflux_flag_countflux_gepflux_matchflux_plotflux_qualitystupeflux
Dependencies:backportsbitbit64broomclicliprcolorspacecpp11crayondplyrfansifarverforcatsgenericsggforceggplot2gluegtablehavenhmsisobandjsonlitelabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpolyclipprettyunitsprogresspurrrpurrrlyrR6RColorBrewerRcppRcppEigenreadrrlangscalesstringistringrsystemfontstibbletidyrtidyselecttimechangetweenrtzdbutf8vctrsviridisLitevroomwithrzoo
Practical example: from raw gas concentration data to clean ecosystem gas fluxes.
Rendered fromfluxible.Rmdusingknitr::rmarkdownon Mar 28 2025.Last update: 2025-03-27
Started: 2025-02-06
Preparing the data for fluxible
Rendered fromdata-prep.Rmdusingknitr::rmarkdownon Mar 28 2025.Last update: 2025-02-13
Started: 2025-02-06
Working with two gases measured simultaneously
Rendered fromtwo-gases.Rmdusingknitr::rmarkdownon Mar 28 2025.Last update: 2025-02-13
Started: 2025-02-12
